Useful Windows Command Line Program Shortcuts

Here are some useful Command Line shortcuts which work with many versions of the Microsoft Windows Operating System.

Command Line:

            cmd

Advanced Access to User Accounts:

            netplwiz

            control userpasswords2

Fix Boot Records:

            bootrec /fixmbr

            bootrec /fixboot

            bootrec /rebuildbcd

System Config:

            msconfig

Windows Version:

            winver

Add Hardware Wizard:

            hdwwiz

Control Panel:

            control

Device Manager:

            devmgmt

Disk Cleanup:

            cleanmgr

Display:

            dpiscaling

Print Manager:

            printmanagement

Windows Explorer:

            explorer

Windows Repair Disc:

            recdisc

Windows Firewall:

            wf

HPLC Column PORE SIZE (or Pore Diameter) and Retention Time

Think of your typical porous bare silica support as a big sponge full of holes. All of those holes (pores) are where the sample will migrate through before emerging out the other side. With conventional chromatography supports, most of the interaction takes place inside the particle, not on the surface. The size and number of these openings relate to retention time. Besides particle size (particle diameter), pore size is one of the most important characteristics of silica based chromatography supports.


The pore size or pore diameter is often expressed in Angstroms (i.e. 80 A = 8 nm). The degree of porosity relates to the hydrodynamic volume of your sample and is inversely related to the surface area of the support. The larger the surface area of the support (smaller pore size), the longer the possible retention of the sample. For small drug molecule samples under 1,000 daltons (an estimate only) we often use high surface area supports with small pore sizes between 60 and 150 Angstroms (~ 200 to 500 square meters per gram). These provide high retention characteristics useful in separating apart many small compounds in one analysis run. For larger molecules (i.e. peptides and proteins), we employ supports with larger pore sizes (~300 Angstroms). Particles with small pores have larger surface areas which can provide more interaction with the sample. Note: Pore size is often determined using the BET Nitrogen adsorption/desorption equation. Due to endcapping of the support (e.g. C8 or C18), the actual value obtained is often 20-30% less than the original value.

When comparing bare silica columns or trying to identify similar conventional columns for use in a method, pore size must be considered. Manufacturer's publish the pore size in Angstroms (*sometimes in nm) for their different supports. Choosing columns with similar pore sizes is just one of many parameters needed to provide similar retention characteristics. 

Syringe Filter Selection for HPLC or LC/MS samples

This article will address the use of disposable female, Luer-compatible, syringe filters without built-in pre-filters for the filtration of individual samples into vials for HPLC or LC/MS analysis. - Note: 96 or 384 multi-well filtering plates provide for a better solution when large quantities of samples need to be filtered. Note: The presented filter membrane material selection criteria also applies to mobile phase filtration too.

The choice of syringe filter depends on the: filter size (volume) of your sample, the chemical compatibility of the housing and membrane and desired pore size. Selection of the wrong filter size can result in too much sample holdup volume (loss of sample on filter) or overloading of the filter (allowing unfiltered material to pass through). If a membrane or housing is chosen which is not chemically compatible with your solution, then contamination of the sample or rupture of the assembly can result. Choosing a filter with too large a pore size can result in material passing through it which could clog or contaminate the solution (i.e. plug an HPLC system or result in a loss of sterility of a solution). Protein binding affinity is another characteristic of filter membranes and if you are filtering samples of biological interest, then you will also want to consider this specification in your selection criteria too (though it will not be discussed in this article).

Syringe Filter Size:

Filters are available in a variety of sizes which are generally in a disc shape and described by their diameter. Common sizes available for chromatography samples include: 3 mm, 4 mm, 13 mm and 25 mm (~25 - 30 mm) diameter discs. The larger the diameter of the disc, the larger the sample capacity, cross sectional surface area and potential hold-up volume of the sample on the filter. 

Hold-up volume is important because some of the sample will be retained inside the membrane and/or filter housing. If too large a filter is selected, samples with small volumes could be lost entirely in the hold-up volume on the membrane. Smaller filters have lower hold-up volumes. To extract as much sample as possible, be sure and use a post-filtration air purge to reduce the total hold-up volume.

If the volume of the sample you wish to filter is under 1 ml, then a 3 mm filter may provide the lowest hold-up volume and require the smallest amount of solution. To filter samples between 1 ml and 10 ml, the 13 mm diameter filter provides a good balance between hold-up volume and large filter surface area. Larger sample volumes from 5 ml to 50 ml are often filtered through the more common 25 mm diameter filters (~4 times the filtration area as a 13 mm disc).

Chemical Compatibility:

Membrane Material: This is where you really must consult the manufacturer’s own documentation for the most compatible filter membrane for both your sample and the solution that will flow through the filter. To simplify the selection criteria, we can make some generalizations about some of the different types available:

Cellulose Acetate (CA): Use with aqueous solutions and a few hydrocarbons only. Low protein binding so good for many biological samples. Not compatible with ACN or DMSO. Can be autoclaved.

Nylon: Great general purpose material and compatible with many HPLC solvents (including THF, alcohols, ACN), but not strong acids. Nylon has a high affinity to bind proteins. Can be autoclaved.

Polysulfone / Polyethersulfone Variants (PS / PES): Commonly used with tissue culture and ion chromatography samples. Stable with many strong bases and alcohols, but few HPLC solvents (as it is hydrophilic). Low backpressure and low protein binding. Not compatible with ACN. Can be autoclaved.

Polypropylene (PP): General purpose hydrophilic material with resistance to most acids, bases, DMF, DMSO and alcohols. Not recommended for use with hydrocarbons, esters or solvents such as ACN. Can be autoclaved.

Polyvinylidene difluoride (PVDF): Hydrophilic material with broad compatibility. Often a good choice for use with alcohols, hydrocarbons, biomolecules, ether and ACN. Low protein binding. Can be autoclaved.

Polytetrafluoroethylene (PTFE): Reported in most brochures to be chemically resistant to almost all solvents, strong acids and bases. Hydrophobic membrane should be pre-wetted when used with aqueous solutions. Low protein binding and very strong. Can be autoclaved.

Most chromatography grade syringe filters are constructed of either HDPE or PP. These materials are compatible with a wide range of HPLC solvents and both offer low levels of extractables. HDPE has been reported to be more chemically compatible with aqueous basic solutions of NH4OH than PP.

Pore Size:

This will depend on your application and a number of different pore sizes are commonly available from vendors (1 micron, 0.8, 0.45 and 0.22 micron are the most common): 

For example, is sterilization of the fluid the goal? If so, a 0.22 micron filter is generally accepted as the best choice.  


For most chromatography or LC-MS applications either a 0.45 or 0.22 micron filters are preferred.

Summary:

• Please refer to the various manufacturers data sheets to select an appropriate syringe filter with: (1) a low hold-up volume; (2) large enough size for the volume of sample; (3) which is chemically compatible with the solution and material you are going to inject through it and (4) lowest protein binding affinity (if applicable).
   
• To reduce the hold-up volume, use a post-filtration air purge to empty the filter.
   
• Minimize contamination from extractables (in the plastic) by pre-rinsing the filter membrane with some of the clean solution. This can reduce the amount of detectable extractables in your sample. PTFE based membranes have some of the lowest extractable levels so consider their use if this is an issue.
   
• If analyte binding is a concern, select one of the membranes which has the lowest binding affinity such as PVDF or PTFE.

Appropriate Mixer Volume for HPLC and UHPLC Applications

For gradient analysis, most analytical scale HPLC (UHPLC) systems incorporate a solvent mixer which is designed to balance the requirements of moderate dwell volume, low noise and good mixing efficiency. Depending on the method run, the ideal mixer's volume may in fact be completely different than the one installed in your chromatography system. A high-pressure mixing Binary pump can often work well with a slightly lower volume mixer than a low-pressure mixing ternary or quaternary pumping system (because the high pressure mixing gives you a head start), but both pump types benefit from additional mixing.

• Be sure to also consider the volume of any pulse dampener used too as these often have large internal volumes and act as mixers. Some pulse dampeners also incorporate the pressure transducer and/or mixer. These types of combination modules may limit the types of modifications which can be made to optimize the mixing and reduce the dwell volume.

• Don't forget to address the dwell volume contribution of the autosampler, injector loop, interconnecting tubing (extra column volume) and detector flow cell too when optimizing the flow path of your HPLC system.

Here are some general guidelines to help you determine the appropriate mixer volume for your own HPLC system. Note: Since many types of mixer designs exist (static, dynamic, shear...), these are guidelines only. There are some commercially available, high efficiency, low-volume mixers available which can reduce the need for a large volume mixer. Your specific application should be taken into account to determine which size is best.

HPLC System Mixer Volume Choices - Size Matters ("Mixer Volume")

SMALL: Fast or ultrahigh speed separations using low volume, small particle columns. These types of applications depend on a low dwell volume mixer for gradient analysis. To achieve this, your HPLC system should be plumbed with narrow bore capillary tubing (example: 0.005" ID; 0.12mm ID) and include a gradient mixer with a volume of less than 100 ul for low flow rates (example: ~35 ul is rather common size). 

LARGE: High Sensitivity Analysis: Gradient analysis where sensitivity is key, benefit from larger volume mixers to minimize contributions of any UV absorbing additives (e.g. TFA) and turbulence in the flow. Traditional 300 to 750 ul mixers often work well in these applications, provided that the column volumes are also large. Smaller column volumes will require smaller mixer volumes to reduce the added dwell effect.

MEDIUM: Routine HPLC Analysis: Typical analytical separations using 3 to 5 mm ID columns (x 100 mm or longer) usually benefit from modest sized mixers within a range of 200 to 400 ul volume. For these applications, I often start with a recommendation to use a mixer which has 10% of the columns volume as a starting point. For a typical 4.6 x 250 mm, 5 micron porous support column, which has about 3 mLs of internal volume, a 300 ul volume mixer usually provides enough mixing volume for routine gradient analysis.  


Additional Info:

Back in the 1980's we often related mixer volume to intended flow rate/column dimensions. For example: A mixer size of 25 ul was suggested for 50 ul/min flow rates (commonly used with 1 mm ID columns). A mixer size of 200 ul was suggested for 200 ul/min flow rates (commonly used with 2.1 mm ID columns) and 350 ul mixer volume for 1.000 ml/min flow rates (commonly used with 4.6 mm ID columns). Note: Mixers such as these, with large volumes relative to the column volume contributed to large gradient delay times, but this was, and still is, of less concern for isocratic methods.

As mentioned before, the type of mixer, column volume, flow rate and mobile phase characteristics will help suggest the most applicable volume for your application. When in doubt, select a larger mixer volume for isocratic analysis (less baseline noise, better for gradients) and a smaller one if reducing gradient analysis delay volume is critical.