Translator for HPLC HINTS and TIPS for Chromatographers

Tuesday, January 3, 2012

Popular Microsoft Windows® Short Cuts:

Here is a short list of some of the most popular Windows short cuts. Hopefully, you will spot a few that you do not know about and can use.

  • Windows Keyboard Logo Symbol + L: Lock the computer (without using CTRL+ALT+DELETE).

  • ALT+TAB: Easily switch between open programs.
  • ALT+F4: Quit the program.
  • ALT+F4: Closes the current window.

  • SHIFT+DELETE: Delete an item permanently.
  • SHIFT: Press and hold down the SHIFT key while you insert a CD-ROM to bypass the automatic-run feature.

  • CTRL+ESC: Open Start menu.
  • CTRL+C: Copy.
  • CTRL+X: Cut.
  • CTRL+V: Paste.
  • CTRL+Z: Undo.
  • CTRL+B: Bold Font.
  • CTRL+U: Underline Font.
  • CTRL+I: Italic Font.
  • CTRL+Z: Undo the last command

A Full List of Microsoft Short Cut Commands Can Be Found In This Key Directory (Listed by Application): http://support.microsoft.com/search/default.aspx?query=Microsoft%20shortcut%20commands&catalog=LCID%3D1033

Thursday, December 1, 2011

Adduct formation in LC-MS Analysis (esp. ESI)

Almost everything you analyze by Electrospray ionization mass spectrometry will create an adduct with something in the system. Normally, hydrogen is the most common adduct formed (M+1), but other chemicals, often in trace amounts may form adducts with your sample too. Sometimes we can take advantage of this fact and introduce our own adduct into the system (post column) to increase signal sensitivity or help us isolate one signal from another (the addition of an adduct can sometimes increase the signal seen for one species, but not the other). 

One of my favorite elements to form an adduct with is sodium (Na+). Two common forms are; sodium citrate and sodium acetate. Both have PKA’s between 3 and 6 so a variety of buffered solutions can be prepared for use. However, it is very important that we keep the concentration of sodium as low as possible so as to not clog the mass detector or suppress ionization completely (and see nothing BUT Sodium for weeks …). My suggestion is to initially prepare the buffers such that the solution is less than or equal to 3 mM in concentration. The lowest concentration should be used that yields reproducible results. Ranges from 0.1 mM to 5 mM are common. Only use the highest purity, volatile buffers (some manufacturer’s use names such as “ultra” to describe them) when preparing these ‘doping’ solutions for post-column addition and be sure and filter them through a 0.2 micron filter before use. A syringe pump can be used to deliver the solution during the run. A low flow rate should be used to infuse the adduct solution into the main inlet of the detector. Make sure you have a simple way of controlling the pump through the system (e.g. ‘On’ / ‘Off’, contact closure) so the flow can be turned off when you are not acquiring data. Be sure to not only monitor the baseline, but also measure true peak S/N values of a standard when evaluated the results (decreasing baseline noise may also mean the signal is decreasing too).

Ammonium (NH4) is another popular adduct to add to the system, often in the form of ammonium acetate. It reduces the chances of adding more sodium ions to the system (from glassware). Whichever adduct you use in your system, always start off testing as low a concentration as possible. Monitor the baseline carefully for noise and also to see if the addition of the compound is suppressing or enhancing the signal generated for your compound. Careful use of adducts in your system can provide you with another means to selectively enhance the signal of some compounds without changing the original chromatography method.

I must again emphasize to use the lowest concentration of doping agent. Proper pH control and mode choice are also very important. Use of a syringe pump for infusion, post column can help you to quickly optimize the fragmentor settings in real time.

Monday, October 17, 2011

HPLC PUMP SOLVENT COMPRESSIBILITY VALUES

Have you ever noticed excessive pump ripple (baseline noise) that is not caused by a defective check valve ? The ripple might be due to an incorrect HPLC Pump solvent compressibility setting.

We normally think of liquids as not being compressible in general. Hydraulic systems take advantage of this physical fact and many innovations have been developed using this concept. However, in high pressure liquid chromatography (HPLC) we routinely subject different liquids to very high pressures which can result in measurable liquid compression. The degree of actual compression varies for each liquid (see table). Though the amount of compression is very small, it is enough to change the flow rate of the system. When multiple solvents are mixed together at different proportions, such as is common when running a gradient, the measured flow rate can vary from the set flow rate during the entire run. This flow rate accuracy issue can be compensated for using the built-in solvent compressibility compensation software which is found in most modern HPLC systems. Many of these systems will allow you to manually enter the actual liquid compressibility values for each solvent (pump channel) used. This can result in better baseline stability and less pump noise. I would like to point out that the small improvement gained in performance is best implemented AFTER other major changes have been addressed first (i.e. such as fully degassing your solvents; filtering samples before injecting; selecting the best signal bandwidth and sampling rate values for your detector and insuring that your pumping system has received regular maintenance). 
 
Note how Water has a compressibility value of ~ 46, but a very common solvent such as Methanol has a value of 120. These two are very different. *Most pumps are pre-set with a compressibility value of '100'. A 50/50 mixture of the two run isocratically might benefit from a manually edited compressibility value of 83 [(46 + 120) = 166 / 2 = 83)]. *This is a best guess value as the best compressibility value for a mixture of liquids must be determined through actual experiments. Choose the value which results in the lowest pump pressure ripple and/or noise. 


SOLVENT COMPRESSIBILITY VALUES TABLE:

Solvent
Compressibility (10-6 per bar)
Water
46
Acetone
126
Acetonitrile
96
Benzene
95
Carbon Tetrachloride
106
Chloroform
100
Cyclohexane
113
Dichloromethane
99
Ethanol
112
Ethyl Acetate
113
Heptane
144
Hexane
158
Isopropanol
100
Methanol
120
Tetrahydrofuran
97
Toluene
90

Notes: 
(1) The values shown above are approximate and assumed to be accurate. They were recorded at a temperature of 20C (Reference: Handbook of Chemistry and Physics #90). Various grades/purity of solvent may have different compressibility values so please verify the values of your own solvents before use. These should serve as a general guideline only.

(2) The variation in pressure which occurs between the pump piston compression and decompression strokes are sometimes reported by the pump's electronics to aid in troubleshooting. Agilent/HP brand systems refer to it as the pressure "ripple" (should be less than 0.5 %) and Waters brand systems report the calculated ratio, "Compression / Decompression Ratio" value using this guideline [1.0 - 1.4 = Normal; 1.4 -1.8 = Fair; > 1.8 = Possible Bubble]. In all cases, continously degass all liquids and input the correct compressibility values for each mobile phase solution to achieve the most stable flow.